Everything in your terminal output looks fine (or normal). Launching Nautilus as root will throw a few warnings since your saved configurations are stored in home, not in Root.
As to your specific error - this seems to be a common on displayed on Zorin OS 17 since its release - and I have not figured out why. Or which package it is referring to.
It implies a bug in the updater.
Thank you so much, you legend! This happened to me immediately after updating the bios and thunderbolt controller on my Thinkpad t480s. Didn't cause any issues, but was pretty annoying. Thank you again.
Ah, I finally got it! too be busy to read stuff properly! No more notification! I just hope that the notification wasn't telling me something I needed to know and that I've just stopped being notified of an issue!