MacPro MP6,1 GUI glitched

Hi erveryone,

MacPro MP6,1 (2013) aka «iBin» or «Trash can» has two, non-bridged, GPU : AMD/ATI FirePro D700 (aka Radeon HD7980).

It works excepts :

Only two apps affected (2 on 44) :

  • Anytype (GPU accelerated ?)
  • GDeb equivalent (translation from french : Install the Linux software)

Please find journalctlentries when Anytype started :

ai 22 15:19:23 <hostname> systemd[4367]: Started app-flatpak-io.anytype.anytype-21964.scope.
mai 22 15:19:23 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151923.651600:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:23 <hostname> dleyna-renderer-service[21936]: dLeyna: Exit
mai 22 15:19:23 <hostname> PackageKit[1505]: resolve transaction /976_deaaebbb from uid 1908801115 finished with success after 528ms
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: Checking for beta autoupdate feature for deb/rpm distributions
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: Found package-type: deb
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[22006]: LaunchProcess: failed to execvp:
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[22006]: xdg-settings
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151924.748464:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151924.748539:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151924.748586:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151924.748628:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:24 <hostname> io.anytype.anytype.desktop[21950]: [2:0522/151924.748668:ERROR:bus.cc(407)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: Aucun fichier ou dossier de ce nom
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [ConfigManager].init: {
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   showMenuBar: true,
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   channel: 'latest',
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   theme: 'system',
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   debug: {},
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   flagsMw: {},
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   systemInfo: true,
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   languages: [ 'fr-FR' ],
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]:   interfaceLang: 'fr-FR'
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: }
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [Server] start /app/Anytype/resources/app.asar.unpacked/dist/anytypeHelper /home/<user>/.var/app/io.anytype.anytype/config/anytype
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: mw grpc: build on 2025-05-09 13:56:27 +0000 UTC at #d0dff8b9a774bb25e57dc6aaf3e8cf0903351d69
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: gRPC server started at: 127.0.0.1:36869
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: gRPC Web proxy started at: 127.0.0.1:39055
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [UpdateManager].init, channel:  latest
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [UpdateManager].isAllowed, osVersion:  [ '6', '8', '0-59-generic' ] appVersion [ '0', '46', '5' ]
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [UpdateManager].isAllowed, osVersion:  [ '6', '8', '0-59-generic' ] appVersion [ '0', '46', '5' ]
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [InstallNativeMessaging] Manifest skipped: Chrome
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [InstallNativeMessaging] Manifest skipped: Chromium
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [InstallNativeMessaging] Manifest skipped: Brave
mai 22 15:19:25 <hostname> io.anytype.anytype.desktop[21950]: [InstallNativeMessaging] Manifest skipped: BraveFlatpak
mai 22 15:19:25 <hostname> gnome-shell[4483]: JS ERROR: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.Failed: error occurred in AboutToShow
                                                   _promisify/proto[asyncFunc]/</<@resource:///org/gnome/gjs/modules/core/overrides/Gio.js:446:45
                                                   ### Promise created here: ###
                                                   sendAboutToShow@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:501:48
                                                   sendAboutToShow@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:197:22
                                                   attachToMenu@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:864:24
                                                   _updateMenu/this._menuReadyId<@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/indicatorStatusIcon.js:326:38
                                                   _emit@resource:///org/gnome/gjs/modules/core/_signals.js:114:47
                                                   AppIndicatorsClient/<@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:835:24
                                                   _updateLayoutState@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:365:18
                                                   _layoutUpdateUpdateAsync@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:346:18
                                                   async*_beginLayoutUpdate@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:326:14
                                                   _requestLayoutUpdate@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:276:14
                                                   initAsync@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:254:14
                                                   async*AppIndicatorsClient@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:829:22
                                                   _updateMenu@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/indicatorStatusIcon.js:318:32
                                                   _showIfReady@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/indicatorStatusIcon.js:339:14
                                                   _emit@resource:///org/gnome/gjs/modules/core/_signals.js:114:47
                                                   _checkIfReady@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/appIndicator.js:476:18
                                                   checkIfReadyChanged@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/appIndicator.js:658:50
                                                   _onPropertiesChanged/<@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/appIndicator.js:666:17
                                                   _onPropertiesChanged@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/appIndicator.js:662:15
mai 22 15:19:26 <hostname> gnome-shell[4483]: Invalid window geometry for xdg_surface@38. Ignoring for now, but this will result in client termination in the future.
mai 22 15:19:29 <hostname> dbus-daemon[4384]: apparmor="DENIED" operation="dbus_method_call"  bus="session" path="/org/freedesktop/ScreenSaver" interface="org.freedesktop.ScreenSaver" member="GetIdleTime" mask="send" name="org.freedesktop.ScreenSaver" pid=18680 label="snap.1password.1password" peer_pid=4663 peer_label="unconfined"
mai 22 15:19:29 <hostname> dbus-daemon[4384]: apparmor="DENIED" operation="dbus_method_call"  bus="session" path="/org/freedesktop/ScreenSaver" interface="org.freedesktop.ScreenSaver" member="GetSessionIdleTime" mask="send" name="org.freedesktop.ScreenSaver" pid=18680 label="snap.1password.1password" peer_pid=4663 peer_label="unconfined"
mai 22 15:19:30 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:30.993+0200","logger":"anytype-config","msg":"using sqlite storage"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: ### lenient true
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: 2025/05/22 15:19:31 failed to sufficiently increase receive buffer size (was: 208 kiB, wanted: 7168 kiB, got: 416 kiB). See https://github.com/quic-go/quic-go/wiki/UDP-Buffer-Sizes for details.
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.400+0200","logger":"anytype-mw-smartblock","msg":"failed to get recommended layout from details of type: failed to find id of object type. Fallback to basic layout"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: Starting API server on 127.0.0.1:31009
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.403+0200","logger":"anytype-mw-smartblock","msg":"failed to get recommended layout from details of type: failed to find id of object type. Fallback to basic layout"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"INFO","ts":"2025-05-22T15:19:31.406+0200","logger":"core.block.editor.spaceview","msg":"set space persistent info","spaceId":"<id>","spaceId":"<id>","accountStatus":"Unknown"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.408+0200","logger":"anytype-mw-smartblock","msg":"failed to get recommended layout from details of type: failed to find id of object type. Fallback to basic layout"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"INFO","ts":"2025-05-22T15:19:31.459+0200","logger":"common.commonspace.headsync","msg":"sync done:","spaceId":"<id>","newIds":0,"changedIds":0,"removedIds":0,"already deleted ids":0,"peerId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: 2025-05-22T15:19:31.500+0200        DEBUG        anytype-identity        globalName was not found for our own identity in Naming Service
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.510+0200","logger":"anytype-mw-smartblock","msg":"failed to get recommended layout from details of type: failed to find id of object type. Fallback to basic layout"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"INFO","ts":"2025-05-22T15:19:31.519+0200","logger":"common.commonspace.headsync","msg":"sync done:","spaceId":"<id>","newIds":0,"changedIds":0,"removedIds":0,"already deleted ids":0,"peerId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.629+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"bafyreiguormq2brfbpno2wkvxbjkb7fvfmhzi4bqrzc6urofo2pmnsiizi"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.629+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"loadObjectsAsync failed","error":"build tree: tree not found","spaceId":"<id>","objectId":"<id>"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.spaceobject.objectprovider","msg":"can't load object","error":"build tree: tree not found"}
mai 22 15:19:31 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:31.630+0200","logger":"client.space","msg":"missing bundled objects","ids":["_briconName","_brrecommendedFeaturedRelations","_brrecommendedHiddenRelations","_brrecommendedFileRelations","_brlayoutWidth","_brdefaultViewType","_brdefaultTypeId","_brresolvedLayout","_brpluralName"]}
mai 22 15:19:35 <hostname> gnome-shell[4483]: JS ERROR: Gio.DBusError: GDBus.Error:org.freedesktop.DBus.Error.Failed: error occurred in AboutToShow
                                                   _promisify/proto[asyncFunc]/</<@resource:///org/gnome/gjs/modules/core/overrides/Gio.js:446:45
                                                   ### Promise created here: ###
                                                   sendAboutToShow@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:501:48
                                                   sendAboutToShow@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:197:22
                                                   _onMenuOpened@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/dbusMenu.js:935:28
                                                   _emit@resource:///org/gnome/gjs/modules/core/_signals.js:114:47
                                                   open@resource:///org/gnome/shell/ui/popupMenu.js:927:14
                                                   toggle@resource:///org/gnome/shell/ui/popupMenu.js:800:18
                                                   vfunc_button_press_event@/usr/share/gnome-shell/extensions/zorin-appindicator@zorinos.com/indicatorStatusIcon.js:425:27
mai 22 15:19:39 <hostname> dbus-daemon[4384]: apparmor="DENIED" operation="dbus_method_call"  bus="session" path="/org/freedesktop/ScreenSaver" interface="org.freedesktop.ScreenSaver" member="GetIdleTime" mask="send" name="org.freedesktop.ScreenSaver" pid=18680 label="snap.1password.1password" peer_pid=4663 peer_label="unconfined"
mai 22 15:19:39 <hostname> dbus-daemon[4384]: apparmor="DENIED" operation="dbus_method_call"  bus="session" path="/org/freedesktop/ScreenSaver" interface="org.freedesktop.ScreenSaver" member="GetSessionIdleTime" mask="send" name="org.freedesktop.ScreenSaver" pid=18680 label="snap.1password.1password" peer_pid=4663 peer_label="unconfined"
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: [Api].exit, relaunch: false
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: [anytype-heart] Shutdown: received OS signal (terminated), closing components...
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.495+0200","logger":"anytype-mw-api","msg":"stream eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJzZWVkIjoiVVRsV2pTQk4ifQ.-bHdAMU7z2k7RvfGzHX4rIgNK2fG9IaEnj_dyVObey4 interrupted"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.496+0200","logger":"fileobject","msg":"index loop: wait for index request: context canceled"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.496+0200","logger":"anytype-grpc","msg":"failed to send event: rpc error: code = Unavailable desc = transport is closing"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.497+0200","logger":"anytype-grpc","msg":"failed to send event: rpc error: code = Unavailable desc = transport is closing"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.497+0200","logger":"anytype-grpc","msg":"failed to send event: rpc error: code = Unavailable desc = transport is closing"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"WARN","ts":"2025-05-22T15:19:44.511+0200","logger":"common.commonspace","msg":"call space.Close on closed space","id":"<id>"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: failed to write to gelf: failed to write: write tcp 192.168.7.9:37708->3.68.115.181:6888: write: broken pipe
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: {"level":"ERROR","ts":"2025-05-22T15:19:44.518+0200","logger":"net.transport.quic","msg":"listener closed with error","localAddr":"[::]:39497","error":"context canceled"}
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: [anytype-heart] Shutdown: graceful shutdown finished
mai 22 15:19:44 <hostname> io.anytype.anytype.desktop[21950]: [Api].shutdown, relaunch: false
mai 22 15:19:44 <hostname> systemd[4367]: app-flatpak-io.anytype.anytype-21929.scope: Consumed 17.052s CPU time.

Attempts :

  • update old Tahiti GPU driver to Tahiti XT [Radeon HD 7970/8970 OEM / R9 280X]
  • launch with Dedicated GPU from GNOME Shell

Have you try switching between Xorg and wayland?

It works.
Sorry, I don't think about this.
Thanks a lot.